3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05983

Details:

PFam ID : PF05983

PFam Domain Description : MED7 protein

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 132

Average sequence length: 173.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05983	MED7_NEUCR_10_264	86.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05983	MED7_NEUCR_10_264	100

Sequence based PCA Plot of the family - PF05983 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=8
Motif2 Start=6 Length=17
Motif3 Start=158 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay