3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05982

Details:

PFam ID : PF05982

PFam Domain Description : Domain of unknown function (DUF897)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 150

Average sequence length: 308.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05982	A9A195_NITMS_14_343	63.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05982	A9A195_NITMS_14_343	100

Sequence based PCA Plot of the family - PF05982 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=90 Length=8
Motif3 Start=32 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay