3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05981

Details:

PFam ID : PF05981

PFam Domain Description : CreA protein

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 198

Average sequence length: 127.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05981	E2PFT2_NEIPO_55_116	22.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05981	E1Z5T0_9CHLO_48_185	100

Sequence based PCA Plot of the family - PF05981 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=77 Length=11
Motif2 Start=111 Length=8
Motif3 Start=49 Length=8
Motif4 Start=14 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay