3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05979

Details:

PFam ID : PF05979

PFam Domain Description : Bacterial protein of unknown function (DUF896)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 246

Average sequence length: 61.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05979	C3ZL60_BRAFL_182_279	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05979	E0QJF5_9FIRM_10_59	99.5

Sequence based PCA Plot of the family - PF05979 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=27 Length=33
Motif2 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay