3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05978

Details:

PFam ID : PF05978

PFam Domain Description : Ion channel regulatory protein UNC-93

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 221

Average sequence length: 135.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05978	C3ZL60_BRAFL_182_279	21.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05978	E3NBP0_CAERE_18_129	99.5

Sequence based PCA Plot of the family - PF05978 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=5 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay