3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05977

Details:

PFam ID : PF05977

PFam Domain Description : Transmembrane secretion effector

Number of Sequence in 50% Dataset : 658

Number of Sequence in Full Dataset : 1703

Average sequence length: 391.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05977	E7M801_9BACL_7_312	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05977	Q2JP71_SYNJB_315_403	100

Sequence based PCA Plot of the family - PF05977 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=129 Length=8
Motif3 Start=56 Length=11
Motif4 Start=146 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay