3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05975

Details:

PFam ID : PF05975

PFam Domain Description : Bacterial ABC transporter protein EcsB

Number of Sequence in 50% Dataset : 92

Number of Sequence in Full Dataset : 208

Average sequence length: 300.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05975	E7M801_9BACL_7_312	91.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05975	Q03WU8_LEUMM_3_410	100

Sequence based PCA Plot of the family - PF05975 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=277 Length=8
Motif3 Start=83 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay