3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05972

Details:

PFam ID : PF05972

PFam Domain Description : APC 15 residue motif

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 23

Average sequence length: 15.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05972	F1QN37_DANRE_1146_1160	31.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05972	E2A939_9HYME_65_80	100

Sequence based PCA Plot of the family - PF05972 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay