3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05965

Details:

PFam ID : PF05965

PFam Domain Description : F/Y rich C-terminus

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 181

Average sequence length: 83.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05965	D8T510_SELML_653_747	79.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05965	D8T510_SELML_653_747	100

Sequence based PCA Plot of the family - PF05965 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=20 Length=8
Motif2 Start=2 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay