3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05964

Details:

PFam ID : PF05964

PFam Domain Description : F/Y-rich N-terminus

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 168

Average sequence length: 51.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05964	A2DM79_TRIVA_1216_1268	90.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05964	Q8SWA8_ENCCU_90_147	100

Sequence based PCA Plot of the family - PF05964 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=26 Length=8
Motif3 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay