3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05962

Details:

PFam ID : PF05962

PFam Domain Description : HutD

Number of Sequence in 50% Dataset : 93

Number of Sequence in Full Dataset : 287

Average sequence length: 175.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05962	D2VRV3_NAEGR_15_63	98.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05962	E0IHP7_9GAMM_23_245	100

Sequence based PCA Plot of the family - PF05962 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=8
Motif2 Start=33 Length=8
Motif3 Start=50 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay