3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05960

Details:

PFam ID : PF05960

PFam Domain Description : Bacterial protein of unknown function (DUF885)

Number of Sequence in 50% Dataset : 207

Number of Sequence in Full Dataset : 625

Average sequence length: 492.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05960	A1ZFR1_9BACT_2_48	84.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05960	A4SIB8_AERS4_39_697	99.8

Sequence based PCA Plot of the family - PF05960 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=602 Length=8
Motif2 Start=503 Length=8
Motif3 Start=631 Length=8
Motif4 Start=466 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay