3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05958

Details:

PFam ID : PF05958

PFam Domain Description : tRNA (Uracil-5-)-methyltransferase

Number of Sequence in 50% Dataset : 265

Number of Sequence in Full Dataset : 2138

Average sequence length: 254.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05958	Q4T2L6_TETNG_1786_2144	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05958	F2UBJ2_9EUKA_42_208	100

Sequence based PCA Plot of the family - PF05958 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=306 Length=11
Motif2 Start=226 Length=14
Motif3 Start=358 Length=20
Motif4 Start=328 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay