3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05957

Details:

PFam ID : PF05957

PFam Domain Description : Bacterial protein of unknown function (DUF883)

Number of Sequence in 50% Dataset : 121

Number of Sequence in Full Dataset : 341

Average sequence length: 92.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05957	Q4T2L6_TETNG_1786_2144	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05957	E3F4F7_KETVY_1_122	100

Sequence based PCA Plot of the family - PF05957 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=95 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay