3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05951

Details:

PFam ID : PF05951

PFam Domain Description : Bacterial protein of unknown function (DUF882)

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 255

Average sequence length: 144.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05951	A6GS16_9BURK_55_211	88.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05951	A6GS16_9BURK_55_211	100

Sequence based PCA Plot of the family - PF05951 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=104 Length=8
Motif2 Start=81 Length=8
Motif3 Start=132 Length=8
Motif4 Start=146 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay