3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05950

Details:

PFam ID : PF05950

PFam Domain Description : Orthopoxvirus A36R protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 4

Average sequence length: 86

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05950	A0LU90_ACIC1_103_265	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05950	Q912M8_9POXV_1_155	100

Sequence based PCA Plot of the family - PF05950 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay