3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05949

Details:

PFam ID : PF05949

PFam Domain Description : Bacterial protein of unknown function (DUF881)

Number of Sequence in 50% Dataset : 97

Number of Sequence in Full Dataset : 401

Average sequence length: 149.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05949	A0LU90_ACIC1_103_265	98.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05949	A0LU90_ACIC1_103_265	100

Sequence based PCA Plot of the family - PF05949 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=68 Length=8
Motif3 Start=54 Length=11
Motif4 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay