3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05947

Details:

PFam ID : PF05947

PFam Domain Description : Bacterial protein of unknown function (DUF879)

Number of Sequence in 50% Dataset : 136

Number of Sequence in Full Dataset : 391

Average sequence length: 560.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05947	B0QWC7_HAEPR_33_128	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05947	D7N180_9NEIS_5_657	100

Sequence based PCA Plot of the family - PF05947 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=179 Length=8
Motif2 Start=77 Length=8
Motif3 Start=2 Length=8
Motif4 Start=129 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay