3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05942

Details:

PFam ID : PF05942

PFam Domain Description : Archaeal PaREP1/PaREP8 family

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 269

Average sequence length: 112.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05942	B1L569_KORCO_3_69	25.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05942	Q96ZU5_SULTO_34_109	100

Sequence based PCA Plot of the family - PF05942 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=30 Length=17
Motif3 Start=94 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay