3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05940

Details:

PFam ID : PF05940

PFam Domain Description : NnrS protein

Number of Sequence in 50% Dataset : 132

Number of Sequence in Full Dataset : 330

Average sequence length: 365.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05940	C6SL47_NEIME_4_184	96.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05940	E7RW67_9BURK_23_449	100

Sequence based PCA Plot of the family - PF05940 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=69 Length=8
Motif2 Start=60 Length=8
Motif3 Start=112 Length=8
Motif4 Start=161 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay