3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05935

Details:

PFam ID : PF05935

PFam Domain Description : Arylsulfotransferase (ASST)

Number of Sequence in 50% Dataset : 110

Number of Sequence in Full Dataset : 262

Average sequence length: 382.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05935	F0XWQ6_9STRA_1389_1627	91.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05935	C3WBT9_FUSMR_303_486	100

Sequence based PCA Plot of the family - PF05935 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=330 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay