3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05934

Details:

PFam ID : PF05934

PFam Domain Description : Mid-1-related chloride channel (MCLC)

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 26

Average sequence length: 305.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05934	B3S2H8_TRIAD_242_495	76.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05934	B7ZR83_XENLA_1_432	100

Sequence based PCA Plot of the family - PF05934 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=120 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay