3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05933

Details:

PFam ID : PF05933

PFam Domain Description : Fungal ATP synthase protein 8 (A6L)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 76

Average sequence length: 47.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05933	D2U498_9ENTR_6_118	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05933	Q950U7_HYACU_1_48	100

Sequence based PCA Plot of the family - PF05933 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay