3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05923

Details:

PFam ID : PF05923

PFam Domain Description : APC cysteine-rich region

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 66

Average sequence length: 25.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05923	D7EI69_TRICA_325_349	27.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05923	E5SLC9_TRISP_553_578	98.4

Sequence based PCA Plot of the family - PF05923 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=16 Length=8
Motif2 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay