3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05920

Details:

PFam ID : PF05920

PFam Domain Description : Homeobox KN domain

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 464

Average sequence length: 40.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05920	C5DJY8_LACTC_53_92	86.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05920	E3N9A2_CAERE_206_261	99.7

Sequence based PCA Plot of the family - PF05920 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=7 Length=18
Motif2 Start=30 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay