3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05919

Details:

PFam ID : PF05919

PFam Domain Description : Mitovirus RNA-dependent RNA polymerase

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 33

Average sequence length: 264.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05919	B9TB52_RICCO_1_60	81.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05919	Q5TMB5_9VIRU_174_658	96.8

Sequence based PCA Plot of the family - PF05919 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=309 Length=8
Motif2 Start=229 Length=8
Motif3 Start=178 Length=11
Motif4 Start=268 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay