3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05918

Details:

PFam ID : PF05918

PFam Domain Description : Apoptosis inhibitory protein 5 (API5)

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 77

Average sequence length: 356.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05918	F1KV79_ASCSU_5_457	74.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05918	Q0E1R8_ORYSJ_1_271	98.6

Sequence based PCA Plot of the family - PF05918 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=413 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay