3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05916

Details:

PFam ID : PF05916

PFam Domain Description : GINS complex protein

Number of Sequence in 50% Dataset : 148

Number of Sequence in Full Dataset : 530

Average sequence length: 112.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05916	A0BB42_PARTE_13_123	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05916	E0VWC1_PEDHC_52_180	57

Sequence based PCA Plot of the family - PF05916 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=1 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay