3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05913

Details:

PFam ID : PF05913

PFam Domain Description : Bacterial protein of unknown function (DUF871)

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 228

Average sequence length: 323.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05913	E5CVZ5_9STAP_1_204	82.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05913	F1TF46_9CLOT_3_372	100

Sequence based PCA Plot of the family - PF05913 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=38 Length=8
Motif2 Start=24 Length=8
Motif3 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay