3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05912

Details:

PFam ID : PF05912

PFam Domain Description : Caenorhabditis elegans protein of unknown function (DUF870)

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 47

Average sequence length: 102.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05912	O16707_CAEEL_26_142	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05912	E3N5J4_CAERE_158_287	100

Sequence based PCA Plot of the family - PF05912 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=84 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay