3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05902

Details:

PFam ID : PF05902

PFam Domain Description : 4.1 protein C-terminal domain (CTD)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 55

Average sequence length: 104.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05902	D8RLW4_SELML_20_94	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05902	B0WF91_CULQU_1611_1700	98.1

Sequence based PCA Plot of the family - PF05902 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay