3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05896

Details:

PFam ID : PF05896

PFam Domain Description : Na(+)-translocating NADH-quinone reductase subunit A (NQRA)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 232

Average sequence length: 251.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05896	Q1YNZ4_9GAMM_1_169	84.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05896	Q6MF30_PARUW_6_271	100

Sequence based PCA Plot of the family - PF05896 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=123 Length=26
Motif2 Start=57 Length=8
Motif3 Start=199 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay