3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05893

Details:

PFam ID : PF05893

PFam Domain Description : Acyl-CoA reductase (LuxC)

Number of Sequence in 50% Dataset : 71

Number of Sequence in Full Dataset : 169

Average sequence length: 318.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05893	C6PQ10_9CLOT_1_83	91.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05893	B9XN01_9BACT_37_448	100

Sequence based PCA Plot of the family - PF05893 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=397 Length=8
Motif2 Start=102 Length=8
Motif3 Start=177 Length=8
Motif4 Start=239 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay