3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05892

Details:

PFam ID : PF05892

PFam Domain Description : Trichovirus coat protein

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 39

Average sequence length: 155.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05892	D0RAZ8_9VIRU_210_363	64.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05892	B2ZF42_9VIRU_8_146	100

Sequence based PCA Plot of the family - PF05892 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=11 Length=8
Motif3 Start=109 Length=8
Motif4 Start=69 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay