3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05891

Details:

PFam ID : PF05891

PFam Domain Description : AdoMet dependent proline di-methyltransferase

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 177

Average sequence length: 196.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05891	Q8IFX3_CAEEL_1_91	79.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05891	B0CSJ4_LACBS_5_247	100

Sequence based PCA Plot of the family - PF05891 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=93 Length=11
Motif2 Start=227 Length=17
Motif3 Start=19 Length=8
Motif4 Start=144 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay