3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05890

Details:

PFam ID : PF05890

PFam Domain Description : Eukaryotic rRNA processing protein EBP2

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 169

Average sequence length: 251.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05890	B9R9N5_RICCO_67_133	85.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05890	E7EW98_HUMAN_17_104	100

Sequence based PCA Plot of the family - PF05890 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=103 Length=17
Motif2 Start=74 Length=8
Motif3 Start=224 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay