3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05886

Details:

PFam ID : PF05886

PFam Domain Description : Orthopoxvirus F8 protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 7

Average sequence length: 44.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05886	O44551_CAEEL_7_310	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05886	Q9JFE6_VACCT_1_49	100

Sequence based PCA Plot of the family - PF05886 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay