3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05883

Details:

PFam ID : PF05883

PFam Domain Description : Baculovirus U-box/Ring-like domain

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 42

Average sequence length: 130.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05883	A5IZX9_9BBAC_22_162	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05883	A5IZX9_9BBAC_22_162	100

Sequence based PCA Plot of the family - PF05883 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=57 Length=8
Motif2 Start=68 Length=8
Motif3 Start=79 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay