3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05881

Details:

PFam ID : PF05881

PFam Domain Description : 2',3'-cyclic nucleotide 3'-phosphodiesterase (CNP or CNPase)

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 19

Average sequence length: 156.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05881	C0PU19_SALSA_59_295	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05881	C0PU19_SALSA_59_295	100

Sequence based PCA Plot of the family - PF05881 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay