3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05875

Details:

PFam ID : PF05875

PFam Domain Description : Ceramidase

Number of Sequence in 50% Dataset : 89

Number of Sequence in Full Dataset : 242

Average sequence length: 222.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05875	A6S350_BOTFB_1_145	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05875	F0ZP32_DICPU_10_285	100

Sequence based PCA Plot of the family - PF05875 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=8
Motif2 Start=12 Length=17
Motif3 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay