3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05873

Details:

PFam ID : PF05873

PFam Domain Description : ATP synthase D chain, mitochondrial (ATP5H)

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 159

Average sequence length: 151.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05873	ATP7_SCHPO_3_154	85.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05873	A8P505_BRUMA_2_172	100

Sequence based PCA Plot of the family - PF05873 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=67 Length=8
Motif3 Start=129 Length=8
Motif4 Start=49 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay