3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05872

Details:

PFam ID : PF05872

PFam Domain Description : Bacterial protein of unknown function (DUF853)

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 388

Average sequence length: 455.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05872	C6WVH0_METML_433_482	24

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05872	E8KGN6_9PAST_1_203	100

Sequence based PCA Plot of the family - PF05872 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=72 Length=8
Motif3 Start=121 Length=8
Motif4 Start=59 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay