3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05871

Details:

PFam ID : PF05871

PFam Domain Description : ESCRT-II complex subunit

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 140

Average sequence length: 138.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05871	A7AWW6_BABBO_11_207	82.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05871	F0XFY4_9PEZI_535_723	100

Sequence based PCA Plot of the family - PF05871 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=116 Length=8
Motif2 Start=55 Length=8
Motif3 Start=28 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay