3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05869

Details:

PFam ID : PF05869

PFam Domain Description : DNA N-6-adenine-methyltransferase (Dam)

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 130

Average sequence length: 151.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05869	D4BRV3_BIFBR_11_72	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05869	F2VX11_9CAUD_46_237	100

Sequence based PCA Plot of the family - PF05869 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=8
Motif2 Start=142 Length=8
Motif3 Start=29 Length=8
Motif4 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay