3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05866

Details:

PFam ID : PF05866

PFam Domain Description : Endodeoxyribonuclease RusA

Number of Sequence in 50% Dataset : 175

Number of Sequence in Full Dataset : 429

Average sequence length: 115.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05866	E7B5A6_YERE1_1_80	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05866	B6GEJ5_9ACTN_2_75	100

Sequence based PCA Plot of the family - PF05866 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=5 Length=27
Motif2 Start=85 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay