3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05864

Details:

PFam ID : PF05864

PFam Domain Description : Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7)

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 13

Average sequence length: 58

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05864	E7B5A6_YERE1_1_80	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05864	Q6VZK1_CNPV_1_61	100

Sequence based PCA Plot of the family - PF05864 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=15 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay