3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05862

Details:

PFam ID : PF05862

PFam Domain Description : Helicobacter pylori IceA2 protein

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 17

Average sequence length: 49.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05862	E7B5A6_YERE1_1_80	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05862	C3XHS7_9HELI_1_51	100

Sequence based PCA Plot of the family - PF05862 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay