3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05861

Details:

PFam ID : PF05861

PFam Domain Description : Bacterial phosphonate metabolism protein (PhnI)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 153

Average sequence length: 350.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05861	E7B5A6_YERE1_1_80	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05861	Q18H32_HALWD_2_363	100

Sequence based PCA Plot of the family - PF05861 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=269 Length=8
Motif2 Start=107 Length=8
Motif3 Start=1 Length=8
Motif4 Start=396 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay