3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05860

Details:

PFam ID : PF05860

PFam Domain Description : haemagglutination activity domain

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 782

Average sequence length: 121.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05860	E6QEN2_9ZZZZ_7_85	54.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05860	A6FVI8_9RHOB_45_169	99.8

Sequence based PCA Plot of the family - PF05860 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=58 Length=8
Motif3 Start=68 Length=11
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay