3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05859

Details:

PFam ID : PF05859

PFam Domain Description : Mis12 protein

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 99

Average sequence length: 141.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05859	E1FUF6_LOALO_12_149	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05859	MIS12_PONAB_8_155	100

Sequence based PCA Plot of the family - PF05859 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=73 Length=8
Motif2 Start=3 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay